ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oe9B1 - ECOD Domain | ECOD

ECOD/Domains/e5oe9B1

e5oe9B1

UID: 002132274

PDB

Range: B:13-235
PDB: 5OE9 chain B(all domains)
UniProt: E5DV50 (all domains)

Molecule: Large subunit terminase

3D Structure

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Related Domains

Browse other domains in Terminase_6N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyTerminase_6N(2004.1.1.99)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03237Terminase_6N

Terminase large subunit, T4likevirus-type, N-terminal

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5OE9 RCSB PDB: 5OE9 PDBe: 5OE9 UniProt: E5DV50

Downloads

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