ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5lw3A1 - ECOD Domain | ECOD

ECOD/Domains/e5lw3A1

e5lw3A1

UID: 002132572

RepresentativePDB

Range: A:2-382
PDB: 5LW3 chain A(all domains)
UniProt: Q9ZFH0 (all domains)
Gene: algE6

Molecule: Poly(beta-D-mannuronate) C5 epimerase 6

3D Structure

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Related Domains

Browse other domains in NosD, Pect-lyase_RHGA_epim, Beta_helix →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyNosD, Pect-lyase_RHGA_epim, Beta_helix(207.2.1.76)

Ligands

in contact, ≤ 4 Å

2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-DiolB3P
drugDrugBank DB02676
Calcium ionCA
metal

Pfam Families

Periplasmic copper-binding protein (NosD)

ClanCL0268Pec_lyase-like

PF12708Pect-lyase_RHGA_epim

Rhamnogalacturonase A/epimerase, pectate lyase-like

ClanCL0268Pec_lyase-like

PF13229Beta_helix

Right handed beta helix region

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 5LW3 RCSB PDB: 5LW3 PDBe: 5LW3 UniProt: Q9ZFH0

Downloads

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Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.