ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5y1zD3 - ECOD Domain | ECOD

ECOD/Domains/e5y1zD3

e5y1zD3

UID: 002133272

PDB

Range: D:85-138
PDB: 5Y1Z chain D(all domains)
UniProt: Q9ULU4 (all domains)
Gene: ZMYND8

Molecule: Protein kinase C-binding protein 1

3D Structure

Loading viewer...

Related Domains

Browse other domains in PHD →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupFYVE/PHD zinc finger(376.1.3)

FFamilyPHD(376.1.3.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PHD-finger

ClanCL0229RING

External Links

ECOD PDB View: 5Y1Z RCSB PDB: 5Y1Z PDBe: 5Y1Z UniProt: Q9ULU4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure