ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5o96F2 - ECOD Domain | ECOD

ECOD/Domains/e5o96F2

e5o96F2

UID: 002136515

PDB

Range: F:76-244
PDB: 5O96 chain F(all domains)
UniProt: Q5ZRE6 (all domains)
Gene: lpg2936

Molecule: Ribosomal RNA small subunit methyltransferase E

3D Structure

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Related Domains

Browse other domains in Methyltrans_RNA →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyMethyltrans_RNA(2488.1.1.12)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04452Methyltrans_RNA

RNA methyltransferase domain

ClanCL0098SPOUT

External Links

ECOD PDB View: 5O96 RCSB PDB: 5O96 PDBe: 5O96 UniProt: Q5ZRE6

Downloads

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