ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jvbB1 - ECOD Domain | ECOD

ECOD/Domains/e5jvbB1

e5jvbB1

UID: 002138162

PDB

Range: B:8-109,B:206-261
PDB: 5JVB chain B(all domains)
UniProt: Q119I9 (all domains)
Gene: Tery_0366

Molecule: Phosphonate ABC transporter, periplasmic phosphonate-binding protein

3D Structure

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Related Domains

Browse other domains in Phosphonate-bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyPhosphonate-bd(7523.1.1.25)

Ligands

in contact, ≤ 4 Å

Phosphonate2PO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF12974Phosphonate-bd

ABC transporter, phosphonate, periplasmic substrate-binding protein

ClanCL0177PBP

External Links

ECOD PDB View: 5JVB RCSB PDB: 5JVB PDBe: 5JVB UniProt: Q119I9

Downloads

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