ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5m6gA1 - ECOD Domain | ECOD

ECOD/Domains/e5m6gA1

e5m6gA1

UID: 002138173

PDB

Range: A:37-412
PDB: 5M6G chain A(all domains)
UniProt: A4FNP6 (all domains)
Gene: celD

Molecule: Beta-glucosidase

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_3 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlyco_hydro_3(2002.1.1.39)

Ligands

in contact, ≤ 4 Å

SorbitolSOR
drugDrugBank DB01638
Magnesium ionMG
metal

+ 2 additives (Glycerin, Triethylene glycol)

GlycerinGOL

Pfam Families

PF00933Glyco_hydro_3

Glycosyl hydrolase family 3 N terminal domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5M6G RCSB PDB: 5M6G PDBe: 5M6G UniProt: A4FNP6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Triethylene glycolPGE

DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.