ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5m6zA1 - ECOD Domain | ECOD

ECOD/Domains/e5m6zA1

e5m6zA1

UID: 002138175

PDB

Range: A:191-416
PDB: 5M6Z chain A(all domains)
UniProt: P00558 (all domains)
Gene: PGK1

Molecule: Phosphoglycerate kinase 1

3D Structure

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Related Domains

Browse other domains in PGK →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphoglycerate kinase domain 2(7533)

HH-groupPhosphoglycerate kinase domain 2(7533.1)

TT-groupPhosphoglycerate kinase domain 2(7533.1.1)

FFamilyPGK(7533.1.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Magnesium ionMG
metal

+ 1 additive (Phosphate ion)

Pfam Families

Phosphoglycerate kinase

External Links

ECOD PDB View: 5M6Z RCSB PDB: 5M6Z PDBe: 5M6Z UniProt: P00558

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Phosphate ionPO4

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.