ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5h6oA3 - ECOD Domain | ECOD

ECOD/Domains/e5h6oA3

e5h6oA3

UID: 002138546

PDB

Range: A:10-48,A:68-108,A:205-225
PDB: 5H6O chain A(all domains)
UniProt: Q9KVM1 (all domains)
Gene: hemC

Molecule: Porphobilinogen deaminase

3D Structure

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Related Domains

Browse other domains in Porphobil_deam →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyPorphobil_deam(7523.1.1.6)

Ligands

in contact, ≤ 4 Å

Dipyrromethane CofactorDPM
drugDrugBank DB04517
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from .

Pfam Families

PF01379Porphobil_deam

Porphobilinogen deaminase, dipyromethane cofactor binding domain

ClanCL0177PBP

External Links

ECOD PDB View: 5H6O RCSB PDB: 5H6O PDBe: 5H6O UniProt: Q9KVM1

Downloads

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