ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oobB1 - ECOD Domain | ECOD

ECOD/Domains/e5oobB1

e5oobB1

UID: 002138623

PDB

Range: B:4-155
PDB: 5OOB chain B(all domains)
UniProt: P52298 (all domains)
Gene: NCBP2

Molecule: Nuclear cap-binding protein subunit 2

3D Structure

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Related Domains

Browse other domains in RRM_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRRM_1(304.9.1.1)

Ligands

in contact, ≤ 4 Å

7-Methyl-7,8-dihydroguanosine 5'-(tetrahydrogen triphosphate)MGT
drugDrugBank DB03358

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

RNA recognition motif

ClanCL0221RRM

External Links

ECOD PDB View: 5OOB RCSB PDB: 5OOB PDBe: 5OOB UniProt: P52298

Downloads

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