ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vf5A1 - ECOD Domain | ECOD

ECOD/Domains/e5vf5A1

e5vf5A1

UID: 002140377

PDB

Range: A:5-205
PDB: 5VF5 chain A(all domains)
UniProt: A0A2R2JFS1 (all domains)

Molecule: SM80.1 Vicilin

3D Structure

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Related Domains

Browse other domains in Cupin_1 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyCupin_1(10.12.1.3)

Ligands

in contact, ≤ 4 Å

COPPER (II) IONCU
metal
Sodium ionNA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00190Cupin_1

Cupin

ClanCL0029Cupin

External Links

ECOD PDB View: 5VF5 RCSB PDB: 5VF5 PDBe: 5VF5 UniProt: A0A2R2JFS1

Downloads

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