ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mm6H1 - ECOD Domain | ECOD

ECOD/Domains/e5mm6H1

e5mm6H1

UID: 002141130

PDB

Range: H:16-246
PDB: 5MM6 chain H(all domains)
UniProt: P00734 (all domains)
Gene: F2

Molecule: thrombin heavy chain

3D Structure

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Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

D-phenylalanyl-N-{4-[amino(iminio)methyl]benzyl}-L-prolinamide32U
drugDrugBank DB07005
Sodium ionNA
metal

+ 3 additives (Dimethyl sulfoxide, Glycerin, Phosphate ion)

Dimethyl sulfoxideDMS

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 5MM6 RCSB PDB: 5MM6 PDBe: 5MM6 UniProt: P00734

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

GlycerinGOL

DrugBank DB09462

Phosphate ionPO4

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.