ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5tjzA2 - ECOD Domain | ECOD

ECOD/Domains/e5tjzA2

e5tjzA2

UID: 002141748

PDB

Range: A:0-105,A:215-244
PDB: 5TJZ chain A(all domains)
UniProt: P9WP23 (all domains)
Gene: dapB

Molecule: 4-hydroxy-tetrahydrodipicolinate reductase

3D Structure

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Related Domains

Browse other domains in DapB_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyDapB_N(2003.1.1.12)

Ligands

in contact, ≤ 4 Å

Benzoic acidBEZ
drugDrugBank DB03793
Nicotinamide adenine dinucleotide phosphateNAP
drugDrugBank DB03461

Pfam Families

Dihydrodipicolinate reductase, N-terminus

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5TJZ RCSB PDB: 5TJZ PDBe: 5TJZ UniProt: P9WP23

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Dipicolinic acidPDC

drugDrugBank DB04267

Chloride ionCL

+ 3 additives (Imidazole, Sulfate ion, 1,2-ETHANEDIOL)

ImidazoleIMD
DrugBank DB03366
Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.