ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6f39A1 - ECOD Domain | ECOD

ECOD/Domains/e6f39A1

e6f39A1

UID: 002142447

PDB

Range: A:175-289
PDB: 6F39 chain A(all domains)
UniProt: P00736 (all domains)
Gene: C1R

Molecule: Complement C1r subcomponent

3D Structure

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Related Domains

Browse other domains in CUB →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupSpermadhesin, CUB domain(10.4)

TT-groupSpermadhesin, CUB domain(10.4.1)

FFamilyCUB(10.4.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only
Calcium ionCA
metal
Sodium ion

Pfam Families

CUB domain

ClanCL0164CUB

External Links

ECOD PDB View: 6F39 RCSB PDB: 6F39 PDBe: 6F39 UniProt: P00736

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.