ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oyoB1 - ECOD Domain | ECOD

ECOD/Domains/e5oyoB1

e5oyoB1

UID: 002146303

PDB

Range: B:29-60,B:177-293
PDB: 5OYO chain B(all domains)
UniProt: P9WKD3 (all domains)
Gene: blaC

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Beta-lactamase2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyBeta-lactamase2(223.3.1.8)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, Triethylene glycol)

AcetateACT
DrugBank DB14511
Triethylene glycolPGE
DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13354Beta-lactamase2

Beta-lactamase enzyme family

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 5OYO RCSB PDB: 5OYO PDBe: 5OYO UniProt: P9WKD3

Downloads

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