ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6b89B1 - ECOD Domain | ECOD

ECOD/Domains/e6b89B1

e6b89B1

UID: 002147467

PDB

Range: B:2-227
PDB: 6B89 chain B(all domains)
UniProt: P0A9V1 (all domains)
Gene: lptB

Molecule: Lipopolysaccharide export system ATP-binding protein LptB

3D Structure

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Related Domains

Browse other domains in ABC_tran →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyABC_tran(2004.1.1.5)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
NovobiocinNOV
drugDrugBank DB01051
Magnesium ion

Pfam Families

PF00005ABC_tran

ABC transporter

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6B89 RCSB PDB: 6B89 PDBe: 6B89 UniProt: P0A9V1

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.