ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6bmfA2 - ECOD Domain | ECOD

ECOD/Domains/e6bmfA2

e6bmfA2

UID: 002147525

PDB

Range: A:116-299,A:414-433
PDB: 6BMF chain A(all domains)
UniProt: P52917 (all domains)
Gene: VPS4

Molecule: Vacuolar protein sorting-associated protein 4

3D Structure

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Related Domains

Browse other domains in AAA →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyAAA(2004.1.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Beryllium trifluoride ionBEF
Magnesium ionMG

Pfam Families

ATPase family associated with various cellular activities (AAA)

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6BMF RCSB PDB: 6BMF PDBe: 6BMF UniProt: P52917

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.