ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6bmfC1 - ECOD Domain | ECOD

ECOD/Domains/e6bmfC1

e6bmfC1

UID: 002147526

PDB

Range: C:112-299,C:414-437
PDB: 6BMF chain C(all domains)
UniProt: P52917 (all domains)
Gene: VPS4

Molecule: Vacuolar protein sorting-associated protein 4

3D Structure

Loading viewer...

Related Domains

Browse other domains in AAA →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyAAA(2004.1.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Beryllium trifluoride ionBEF
Magnesium ionMG

Pfam Families

ATPase family associated with various cellular activities (AAA)

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6BMF RCSB PDB: 6BMF PDBe: 6BMF UniProt: P52917

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Shown in the structure viewer. Drug annotations from DrugDomain.