ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5g2bB1 - ECOD Domain | ECOD

ECOD/Domains/e5g2bB1

e5g2bB1

UID: 002147823

PDB

Range: B:586-917
PDB: 5G2B chain B(all domains)
UniProt: Q8WQX9 (all domains)
Gene: PDEB1

Molecule: CLASS 1 PHOSPHODIESTERASE PDEB1

3D Structure

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Related Domains

Browse other domains in PDEase_I →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupPDEase-like(131)

HH-groupHD-domain/PDEase-like(131.1)

TT-groupHD-domain/PDEase-like(131.1.1)

FFamilyPDEase_I(131.1.1.1)

Ligands

in contact, ≤ 4 Å

GuanidineGAI
drugDrugBank DB00536
N-(2-amino-2-oxoethyl)-5'-[(4aR,8aS)-3-cycloheptyl-4-oxo-3,4,4a,5,8,8a-hexahydrophthalazin-1-yl]-2'-methoxy[1,1'-biphenyl]-4-carboxamideLQY
Magnesium ion

Pfam Families

PF00233PDEase_I

3'5'-cyclic nucleotide phosphodiesterase

ClanCL0237HD_PDEase

External Links

ECOD PDB View: 5G2B RCSB PDB: 5G2B PDBe: 5G2B UniProt: Q8WQX9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Zinc ionZN

metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.