ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5olrC1 - ECOD Domain | ECOD

ECOD/Domains/e5olrC1

e5olrC1

UID: 002148111

PDB

Range: C:24-449
PDB: 5OLR chain C(all domains)
UniProt: Q8A051 (all domains)
Gene: BT_4170

Molecule: Rhamnogalacturonan lyase

3D Structure

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Related Domains

Browse other domains in Rhamnogalacturonan lyase BT_4170-like, C-terminal / Pel9A-like, right handed beta helix region →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyRhamnogalacturonan lyase BT_4170-like, C-terminal / Pel9A-like, right handed beta helix region(207.2.1.26)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF16380BT_4170-like_C

Rhamnogalacturonan lyase BT_4170-like, C-terminal

PF22842Pel9A-like_beta_helix

Pel9A-like, right handed beta helix region

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 5OLR RCSB PDB: 5OLR PDBe: 5OLR UniProt: Q8A051

Downloads

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