ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5onyA1 - ECOD Domain | ECOD

ECOD/Domains/e5onyA1

e5onyA1

UID: 002148114

PDB

Range: A:159-336
PDB: 5ONY chain A(all domains)
UniProt: O68601 (all domains)
Gene: nir

Molecule: Copper-containing nitrite reductase

3D Structure

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Related Domains

Browse other domains in Cu-oxidase →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupCupredoxin-like(3156)

HH-groupCupredoxin-related(3156.1)

TT-groupCupredoxin-related(3156.1.1)

FFamilyCu-oxidase(3156.1.1.4)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, Tetraethylene glycol)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Pfam Families

PF00394Cu-oxidase

Multicopper oxidase

ClanCL0026CU_oxidase

External Links

ECOD PDB View: 5ONY RCSB PDB: 5ONY PDBe: 5ONY UniProt: O68601

Downloads

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Tetraethylene glycol

Shown in the structure viewer. Drug annotations from DrugDomain.