ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xmsC2 - ECOD Domain | ECOD

ECOD/Domains/e5xmsC2

e5xmsC2

UID: 002148583

PDB

Range: C:289-442
PDB: 5XMS chain C(all domains)
UniProt: A5K8L9 (all domains)
Gene: PVX_100730

Molecule: Serine hydroxymethyltransferase

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilySHMT(3016.1.1.5)

Ligands

in contact, ≤ 4 Å

N-Pyridoxyl-Glycine-5-MonophosphatePLG
drugDrugBank DB02824
(4~{S})-6-azanyl-4-[3-(2-fluorophenyl)-5-(trifluoromethyl)phenyl]-3-methyl-4-propan-2-yl-2~{H}-pyrano[2,3-c]pyrazole-5-carbonitrile8B3

Shown in the structure viewer.

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 5XMS RCSB PDB: 5XMS PDBe: 5XMS UniProt: A5K8L9

Downloads

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Drug annotations from DrugDomain.