ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6b38B1 - ECOD Domain | ECOD

ECOD/Domains/e6b38B1

e6b38B1

UID: 002149018

PDB

Range: B:1-99
PDB: 6B38 chain B(all domains)
UniProt: P04587 (all domains)
Gene: gag-pol

Molecule: HIV-1 Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

N-(3-fluoro-2-{2-[(2S,6R)-6-methyl-1-(phenylsulfonyl)piperazin-2-yl]ethyl}phenyl)-3,3-bis(4-fluorophenyl)propanamideCKM
Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 6B38 RCSB PDB: 6B38 PDBe: 6B38 UniProt: P04587

Downloads

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