ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6biiB1 - ECOD Domain | ECOD

ECOD/Domains/e6biiB1

e6biiB1

UID: 002149293

PDB

Range: B:100-292
PDB: 6BII chain B(all domains)
UniProt: F8AEA4 (all domains)
Gene: gyaR

Molecule: Glyoxylate reductase

3D Structure

Loading viewer...

Related Domains

Browse other domains in 2-Hacid_dh_C, F420_oxidored →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamily2-Hacid_dh_C, F420_oxidored(2003.1.1.159)

Ligands

in contact, ≤ 4 Å

Nicotinamide adenine dinucleotide phosphateNAP
drugDrugBank DB03461

+ 2 additives (Glycerin, Malonate Ion)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF028262-Hacid_dh_C

D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

ClanCL0063NADP_Rossmann

PF03807F420_oxidored

NADP oxidoreductase coenzyme F420-dependent

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6BII RCSB PDB: 6BII PDBe: 6BII UniProt: F8AEA4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Malonate IonMLI

DrugBank DB02201

Shown in the structure viewer. Drug annotations from DrugDomain.