ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6bqyB1 - ECOD Domain | ECOD

ECOD/Domains/e6bqyB1

e6bqyB1

UID: 002149679

PDB

Range: B:11-227
PDB: 6BQY chain B(all domains)
UniProt: B0VML7 (all domains)
Gene: tyrS

Molecule: Tyrosine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1b →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1b(2005.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00579tRNA-synt_1b

tRNA synthetases class I (W and Y)

ClanCL0039HUP

External Links

ECOD PDB View: 6BQY RCSB PDB: 6BQY PDBe: 6BQY UniProt: B0VML7

Downloads

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