ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6bsgB1 - ECOD Domain | ECOD

ECOD/Domains/e6bsgB1

e6bsgB1

UID: 002149709

PDB

Range: B:5-212,B:233-241
PDB: 6BSG chain B(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: REVERSE TRANSCRIPTASE P51 SUBUNIT

3D Structure

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Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

EfavirenzEFZ
drugDrugBank DB00625within 5 Å only

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 6BSG RCSB PDB: 6BSG PDBe: 6BSG UniProt: P04585

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.