ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mhmA2 - ECOD Domain | ECOD

ECOD/Domains/e5mhmA2

e5mhmA2

UID: 002151606

PDB

Range: A:191-505
PDB: 5MHM chain A(all domains)
UniProt: P00488 (all domains)
Gene: F13A1

Molecule: Coagulation factor XIII A chain

3D Structure

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Related Domains

Browse other domains in Transglut_core →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyTransglut_core(219.1.1.13)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL

+ 2 additives (Sulfate ion, Glycerol)

Sulfate ionSO4

Pfam Families

PF01841Transglut_core

Transglutaminase-like superfamily

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 5MHM RCSB PDB: 5MHM PDBe: 5MHM UniProt: P00488

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.