ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5mjtH1 - ECOD Domain | ECOD

ECOD/Domains/e5mjtH1

e5mjtH1

UID: 002151663

PDB

Range: H:16-245
PDB: 5MJT chain H(all domains)
UniProt: P00734 (all domains)
Gene: F2

Molecule: Thrombin heavy chain

3D Structure

Loading viewer...

Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

beta-phenyl-D-phenylalanyl-N-(3-chlorobenzyl)-L-prolinamide23U
Sodium ionNA
metal

+ 3 additives (Dimethyl sulfoxide, Glycerin, Phosphate ion)

Dimethyl sulfoxideDMS

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 5MJT RCSB PDB: 5MJT PDBe: 5MJT UniProt: P00734

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

GlycerinGOL

DrugBank DB09462

Phosphate ionPO4

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.