ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ndgM01 - ECOD Domain | ECOD

ECOD/Domains/e5ndgM01

e5ndgM01

UID: 002152129

PDB

Range: M0:2-219
PDB: 5NDG chain M0(all domains)
UniProt: P41805 (all domains)
Gene: RPL10

Molecule: 60S ribosomal protein L10

3D Structure

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Related Domains

Browse other domains in Ribosomal_L16 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325)

HH-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325.1)

TT-groupRibosomal protein L10e(325.1.5)

FFamilyRibosomal_L16(325.1.5.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00252Ribosomal_L16

Ribosomal protein L16p/L10e

ClanCL0021OB

External Links

ECOD PDB View: 5NDG RCSB PDB: 5NDG PDBe: 5NDG UniProt: P41805

Downloads

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