ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5obmo41 - ECOD Domain | ECOD

ECOD/Domains/e5obmo41

e5obmo41

UID: 002152823

PDB

Range: o4:2-113
PDB: 5OBM chain o4(all domains)
UniProt: P87262 (all domains)
Gene: RPL34A

Molecule: 60S ribosomal protein L34-A

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ribosomal_L34e →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupGlucocorticoid receptor-like(377)

HH-groupRPL34(377.12)

TT-groupRPL34(377.12.1)

FFamilyRibosomal_L34e(377.12.1.1)

Ligands

in contact, ≤ 4 Å

(2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDROXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOLLLL
Magnesium ionMG
metal
Zinc ionZN

Pfam Families

PF01199Ribosomal_L34e

Ribosomal protein L34e

External Links

ECOD PDB View: 5OBM RCSB PDB: 5OBM PDBe: 5OBM UniProt: P87262

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Shown in the structure viewer. Drug annotations from DrugDomain.