ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oskB1 - ECOD Domain | ECOD

ECOD/Domains/e5oskB1

e5oskB1

UID: 002153171

PDB

Range: B:246-437
PDB: 5OSK chain B(all domains)
UniProt: Q6B856 (all domains)
Gene: TUBB2B

Molecule: Tubulin beta-2B chain

3D Structure

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Related Domains

Browse other domains in Tubulin_C →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupTubulin C-terminal domain-like(301.6)

TT-groupTubulin C-terminal domain-like(301.6.1)

FFamilyTubulin_C(301.6.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
3-(2,5-Dimethoxybenzyl)-7-sulfamoyloxy-6-methoxy-3,4-dihydroquinazolin-2(1H)-oneA9Q
Magnesium ionMG

Pfam Families

PF03953Tubulin_C

Tubulin C-terminal domain

ClanCL0442Tubulin_C

External Links

ECOD PDB View: 5OSK RCSB PDB: 5OSK PDBe: 5OSK UniProt: Q6B856

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metalwithin 5 Å only

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, Glycerol)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814
GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.