ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5u93B1 - ECOD Domain | ECOD

ECOD/Domains/e5u93B1

e5u93B1

UID: 002153565

RepresentativePDB

Range: B:5-165
PDB: 5U93 chain B(all domains)
UniProt: C5A074 (all domains)
Gene: rhaR

Molecule: HTH-type transcriptional activator RhaR

3D Structure

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Related Domains

Browse other domains in AraC_binding, Cupin_2 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyAraC_binding, Cupin_2(10.12.1.104)

Ligands

in contact, ≤ 4 Å

NICKEL (II) IONNI
metal
beta-L-rhamnopyranoseRM4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02311AraC_binding

AraC-like ligand binding domain

ClanCL0029Cupin

PF07883Cupin_2

Cupin domain

ClanCL0029Cupin

External Links

ECOD PDB View: 5U93 RCSB PDB: 5U93 PDBe: 5U93 UniProt: C5A074

Downloads

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