ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5w39A1 - ECOD Domain | ECOD

ECOD/Domains/e5w39A1

e5w39A1

UID: 002153864

PDB

Range: A:21-190
PDB: 5W39 chain A(all domains)
UniProt: Q0PB90 (all domains)
Gene: Cj0420

Molecule: Polyisoprenoid-binding protein

3D Structure

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Related Domains

Browse other domains in YceI →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLipocalins/Streptavidin(9)

HH-groupHypothetical protein TT1927B(9.5)

TT-groupHypothetical protein TT1927B(9.5.1)

FFamilyYceI(9.5.1.1)

Ligands

in contact, ≤ 4 Å

3-(bromomethyl)-2,5,6-trimethyl-1H,7H-pyrazolo[1,2-a]pyrazole-1,7-dione9UM
EicosaneLFA

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

YceI-like domain

External Links

ECOD PDB View: 5W39 RCSB PDB: 5W39 PDBe: 5W39 UniProt: Q0PB90

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.