ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5x06E1 - ECOD Domain | ECOD

ECOD/Domains/e5x06E1

e5x06E1

UID: 002154300

PDB

Range: E:5-164
PDB: 5X06 chain E(all domains)
UniProt: P69933 (all domains)
Gene: hda

Molecule: DnaA regulatory inactivator Hda

3D Structure

Loading viewer...

Related Domains

Browse other domains in Bac_DnaA →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyBac_DnaA(2004.1.1.35)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Magnesium ionMG
metal

+ 1 additive (Glycerin)

Pfam Families

PF00308Bac_DnaA

Bacterial DnaA ATPAse domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5X06 RCSB PDB: 5X06 PDBe: 5X06 UniProt: P69933

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.