ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xk7A1 - ECOD Domain | ECOD

ECOD/Domains/e5xk7A1

e5xk7A1

UID: 002154427

PDB

Range: A:1-216
PDB: 5XK7 chain A(all domains)
UniProt: M4T4U9 (all domains)
Gene: mcl22

Molecule: Undecaprenyl diphosphate synthase

3D Structure

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Related Domains

Browse other domains in Prenyltransf →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupUndecaprenyl diphosphate synthase(7534)

HH-groupUndecaprenyl diphosphate synthase(7534.1)

TT-groupUndecaprenyl diphosphate synthase(7534.1.1)

FFamilyPrenyltransf(7534.1.1.1)

Ligands

in contact, ≤ 4 Å

Dimethylallyl DiphosphateDMA
drugDrugBank DB01785
Magnesium ionMG
metal
PYROPHOSPHATE 2-

Pfam Families

PF01255Prenyltransf

Putative undecaprenyl diphosphate synthase

External Links

ECOD PDB View: 5XK7 RCSB PDB: 5XK7 PDBe: 5XK7 UniProt: M4T4U9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, Sulfate ion)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.