ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xk8B1 - ECOD Domain | ECOD

ECOD/Domains/e5xk8B1

e5xk8B1

UID: 002154431

PDB

Range: B:1-209
PDB: 5XK8 chain B(all domains)
UniProt: M4T4U9 (all domains)
Gene: mcl22

Molecule: Undecaprenyl diphosphate synthase

3D Structure

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Related Domains

Browse other domains in Prenyltransf →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupUndecaprenyl diphosphate synthase(7534)

HH-groupUndecaprenyl diphosphate synthase(7534.1)

TT-groupUndecaprenyl diphosphate synthase(7534.1.1)

FFamilyPrenyltransf(7534.1.1.1)

Ligands

in contact, ≤ 4 Å

Geranyl DiphosphateGPP
drugDrugBank DB02552
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01255Prenyltransf

Putative undecaprenyl diphosphate synthase

External Links

ECOD PDB View: 5XK8 RCSB PDB: 5XK8 PDBe: 5XK8 UniProt: M4T4U9

Downloads

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