ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xk9D1 - ECOD Domain | ECOD

ECOD/Domains/e5xk9D1

e5xk9D1

UID: 002154437

PDB

Range: D:1-209
PDB: 5XK9 chain D(all domains)
UniProt: M4T4U9 (all domains)
Gene: mcl22

Molecule: Undecaprenyl diphosphate synthase

3D Structure

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Related Domains

Browse other domains in Prenyltransf →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupUndecaprenyl diphosphate synthase(7534)

HH-groupUndecaprenyl diphosphate synthase(7534.1)

TT-groupUndecaprenyl diphosphate synthase(7534.1.1)

FFamilyPrenyltransf(7534.1.1.1)

Ligands

in contact, ≤ 4 Å

Dimethylallyl DiphosphateDMA
drugDrugBank DB01785
S-[(2E)-3,7-DIMETHYLOCTA-2,6-DIENYL] TRIHYDROGENTHIODIPHOSPHATEGST
drugDrugBank DB04702

Pfam Families

PF01255Prenyltransf

Putative undecaprenyl diphosphate synthase

External Links

ECOD PDB View: 5XK9 RCSB PDB: 5XK9 PDBe: 5XK9 UniProt: M4T4U9

Downloads

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Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.