ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y6eA1 - ECOD Domain | ECOD

ECOD/Domains/e5y6eA1

e5y6eA1

UID: 002154767

PDB

Range: A:32-262
PDB: 5Y6E chain A(all domains)
UniProt: Q9K2N0 (all domains)
Gene: blaVIM-2

Molecule: Beta-lactamase class B VIM-2

3D Structure

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Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

(2R)-2-(4-hydroxyphenyl)-2-[[(2S)-2-methyl-3-sulfanyl-propanoyl]amino]ethanoic acid8PO
Zinc ionZN
metal

+ 1 additive (Formic acid)

Formic acid

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 5Y6E RCSB PDB: 5Y6E PDBe: 5Y6E UniProt: Q9K2N0

Downloads

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DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.