ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5yjpA1 - ECOD Domain | ECOD

ECOD/Domains/e5yjpA1

e5yjpA1

UID: 002154886

PDB

Range: A:16-245
PDB: 5YJP chain A(all domains)
UniProt: P23946 (all domains)
Gene: CMA1

Molecule: human chymase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
4-((R)-1-((R,Z)-6-(5-chloro-2-methoxybenzyl)-3-(ethoxyimino)-7-oxo-1,4-diazepane-1-carboxamido)propyl)benzoic acid8W6
Zinc ion

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 5YJP RCSB PDB: 5YJP PDBe: 5YJP UniProt: P23946

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Shown in the structure viewer. Drug annotations from DrugDomain.