ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ykoA3 - ECOD Domain | ECOD

ECOD/Domains/e5ykoA3

e5ykoA3

UID: 002154892

PDB

Range: A:42-124,A:169-414
PDB: 5YKO chain A(all domains)
UniProt: Q8GUI6 (all domains)
Gene: JMJ14

Molecule: Probable lysine-specific demethylase JMJ14

3D Structure

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Related Domains

Browse other domains in JmjC,JmjN →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC,JmjN(10.12.1.10)

Ligands

in contact, ≤ 4 Å

NICKEL (II) IONNI
metal
N-oxalylglycineOGA

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

jmjN domain

ClanCL0029Cupin

External Links

ECOD PDB View: 5YKO RCSB PDB: 5YKO PDBe: 5YKO UniProt: Q8GUI6

Downloads

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