ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ogiA1 - ECOD Domain | ECOD

ECOD/Domains/e5ogiA1

e5ogiA1

UID: 002156922

PDB

Range: A:6-140,A:161-624
PDB: 5OGI chain A(all domains)
UniProt: P04133 (all domains)
Gene: L3

Molecule: Hexon protein

3D Structure

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Related Domains

Browse other domains in Adeno_hexon →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyAdeno_hexon(10.2.1.17)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives (1,4-Dioxane, 2-(N-morpholino)ethanesulfonic acid, Sulfate ion, …)

1,4-DioxaneDIO
DrugBank DB03316
2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Pfam Families

PF01065Adeno_hexon

Hexon, adenovirus major coat protein, N-terminal domain

ClanCL0611Hexon

External Links

ECOD PDB View: 5OGI RCSB PDB: 5OGI PDBe: 5OGI UniProt: P04133

Downloads

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Sulfate ion

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.