ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6c8vA1 - ECOD Domain | ECOD

ECOD/Domains/e6c8vA1

e6c8vA1

UID: 002157335

PDB

Range: A:13-353
PDB: 6C8V chain A(all domains)
UniProt: P71517 (all domains)
Gene: pqqE

Molecule: Coenzyme PQQ synthesis protein E

3D Structure

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Related Domains

Browse other domains in Radical_SAM,SPASM →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRadical_SAM,SPASM(2002.1.1.125)

Ligands

in contact, ≤ 4 Å

FE2/S2 (INORGANIC) CLUSTERFES
Iron/sulfur clusterSF4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04055Radical_SAM

Radical SAM superfamily

ClanCL0036TIM_barrel

Iron-sulfur cluster-binding domain

External Links

ECOD PDB View: 6C8V RCSB PDB: 6C8V PDBe: 6C8V UniProt: P71517

Downloads

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