ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xdxP1 - ECOD Domain | ECOD

ECOD/Domains/e5xdxP1

e5xdxP1

UID: 002158341

PDB

Range: P:3-261
PDB: 5XDX chain P(all domains)
UniProt: P00415 (all domains)
Gene: MT-CO3

Molecule: Cytochrome c oxidase subunit 3

3D Structure

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Related Domains

Browse other domains in COX3 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupCytochrome c oxidase subunit III-like(5039)

HH-groupCytochrome c oxidase subunit III-like(5039.1)

TT-groupCytochrome c oxidase subunit III-like(5039.1.1)

FFamilyCOX3(5039.1.1.1)

Ligands

in contact, ≤ 4 Å

Tetrastearoyl cardiolipinCDL
drugDrugBank DB03429
Cholic AcidCHD
drugDrugBank DB02659
Decyl-beta-d-maltopyranoside

Pfam Families

Cytochrome c oxidase subunit III

External Links

ECOD PDB View: 5XDX RCSB PDB: 5XDX PDBe: 5XDX UniProt: P00415

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sodium ionNA

metal

(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATEPEK

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.