ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5xn2C2 - ECOD Domain | ECOD

ECOD/Domains/e5xn2C2

e5xn2C2

UID: 002158382

PDB

Range: C:3-242
PDB: 5XN2 chain C(all domains)
UniProt: P12497 (all domains)
Gene: gag-pol

Molecule: Pol protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

2'-Deoxyguanosine-5'-TriphosphateDGT
drugDrugBank DB02181
Magnesium ionMG
metal

+ 1 additive (Glycerol)

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 5XN2 RCSB PDB: 5XN2 PDBe: 5XN2 UniProt: P12497

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.