ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yizM1 - ECOD Domain | ECOD

ECOD/Domains/e5yizM1

e5yizM1

UID: 002158423

PDB

Range: M:320-427
PDB: 5YIZ chain M(all domains)
UniProt: Q8C7D2 (all domains)
Gene: Crbn

Molecule: Protein cereblon

3D Structure

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Related Domains

Browse other domains in Yippee-Mis18 →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupETN0001 domain-like(708)

HH-groupETN0001 domain-like(708.1)

TT-groupMss4-like(708.1.2)

FFamilyYippee-Mis18(708.1.2.3)

Ligands

in contact, ≤ 4 Å

S-ThalidomideEF2
Zinc ionZN
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

PF03226Yippee-Mis18

Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

ClanCL0080Beta-tent

External Links

ECOD PDB View: 5YIZ RCSB PDB: 5YIZ PDBe: 5YIZ UniProt: Q8C7D2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.