ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yj1e1 - ECOD Domain | ECOD

ECOD/Domains/e5yj1e1

e5yj1e1

UID: 002158461

PDB

Range: e:320-427
PDB: 5YJ1 chain e(all domains)
UniProt: Q8C7D2 (all domains)
Gene: Crbn

Molecule: Protein cereblon

3D Structure

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Related Domains

Browse other domains in Yippee-Mis18 →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupETN0001 domain-like(708)

HH-groupETN0001 domain-like(708.1)

TT-groupMss4-like(708.1.2)

FFamilyYippee-Mis18(708.1.2.3)

Ligands

in contact, ≤ 4 Å

2-[(3~{R})-2,6-bis(oxidanylidene)piperidin-3-yl]isoindole-1,3-dione6EL
Zinc ionZN
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

PF03226Yippee-Mis18

Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

ClanCL0080Beta-tent

External Links

ECOD PDB View: 5YJ1 RCSB PDB: 5YJ1 PDBe: 5YJ1 UniProt: Q8C7D2

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.