ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4dm0A1 - ECOD Domain | ECOD

ECOD/Domains/e4dm0A1

e4dm0A1

UID: 000215919

PDB

Range: A:3-477
PDB: 4DM0 chain A(all domains)
UniProt: Q46731 (all domains)
Gene: tnpA

Molecule: Transposase for transposon Tn5

3D Structure

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Related Domains

Browse other domains in DDE_Tnp_1,Tnp_DNA_bind →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyDDE_Tnp_1,Tnp_DNA_bind(2484.1.1.19)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01609DDE_Tnp_1

Transposase DDE domain

ClanCL0219RNase_H

PF14706Tnp_DNA_bind

Transposase DNA-binding

External Links

ECOD PDB View: 4DM0 RCSB PDB: 4DM0 PDBe: 4DM0 UniProt: Q46731

Downloads

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