ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5myqD1 - ECOD Domain | ECOD

ECOD/Domains/e5myqD1

e5myqD1

UID: 002160822

PDB

Range: D:2-123
PDB: 5MYQ chain D(all domains)
UniProt: P02701 (all domains)
Gene: AVD

Molecule: Avidin

3D Structure

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Related Domains

Browse other domains in Avidin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLipocalins/Streptavidin(9)

HH-groupAvidin/Streptavidin(9.2)

TT-groupAvidin/Streptavidin(9.2.1)

FFamilyAvidin(9.2.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
ferrocene homobiotin derivativeHBF
Iodide ionIOD

Pfam Families

Avidin family

External Links

ECOD PDB View: 5MYQ RCSB PDB: 5MYQ PDBe: 5MYQ UniProt: P02701

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.