ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ygaA2 - ECOD Domain | ECOD

ECOD/Domains/e5ygaA2

e5ygaA2

UID: 002161432

PDB

Range: A:113-324
PDB: 5YGA chain A(all domains)
UniProt: O57947 (all domains)
Gene: PH0208

Molecule: Ribose 1,5-bisphosphate isomerase

3D Structure

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Related Domains

Browse other domains in IF-2B →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNagB/RpiA/CoA transferase-like(2003.1.7)

FFamilyIF-2B(2003.1.7.2)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Potassium ionK
metal
1,5-di-O-phosphono-alpha-D-ribofuranose

Pfam Families

Initiation factor 2 subunit family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5YGA RCSB PDB: 5YGA PDBe: 5YGA UniProt: O57947

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.