ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6b72A1 - ECOD Domain | ECOD

ECOD/Domains/e6b72A1

e6b72A1

UID: 002161512

PDB

Range: A:53-149,A:177-203
PDB: 6B72 chain A(all domains)
UniProt: P03407 (all domains)
Gene: nef

Molecule: Protein Nef

3D Structure

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Related Domains

Browse other domains in F-protein →

Classification

AArchitecturea+b three layers(a.12)

XX-groupRegulatory factor Nef(836)

HH-groupRegulatory factor Nef(836.1)

TT-groupRegulatory factor Nef(836.1.1)

FFamilyF-protein(836.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (octyl beta-D-glucopyranoside)

octyl beta-D-glucopyranosideBOG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00469F-protein

Negative factor, (F-Protein) or Nef

External Links

ECOD PDB View: 6B72 RCSB PDB: 6B72 PDBe: 6B72 UniProt: P03407

Downloads

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