ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6b72D1 - ECOD Domain | ECOD

ECOD/Domains/e6b72D1

e6b72D1

UID: 002161515

PDB

Range: D:55-149,D:177-203
PDB: 6B72 chain D(all domains)
UniProt: P03407 (all domains)
Gene: nef

Molecule: Protein Nef

3D Structure

Loading viewer...

Related Domains

Browse other domains in F-protein →

Classification

AArchitecturea+b three layers(a.12)

XX-groupRegulatory factor Nef(836)

HH-groupRegulatory factor Nef(836.1)

TT-groupRegulatory factor Nef(836.1.1)

FFamilyF-protein(836.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (octyl beta-D-glucopyranoside)

octyl beta-D-glucopyranosideBOG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00469F-protein

Negative factor, (F-Protein) or Nef

External Links

ECOD PDB View: 6B72 RCSB PDB: 6B72 PDBe: 6B72 UniProt: P03407

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure